ChIP-Seq Analysis with Galaxy

Introduction to Galaxy with a focus on ChIP-Seq data.

Slides:

1. Introduction
2. Quality Control on NGS Data
3. File Formats pt1 (NGS Data) 
4. File Formats pt2 (Genomic Features)
5. Peak Calling + Practical Part
6. Putative Binding Motif Discovery
7. (watch out for more)

 

Addendum:

Coverage vs. expected duplicates in the human genome

 

DATE Dec 10 + 11, 2012
TIME 9:00 - 12:30 
LOCATION GMI Orange Room

Genome Browser in Galaxy

Galaxy is a workflow tool to analyse bioinformatic data focusing on simplicity and reproducibility. Now it includes a visualization plugin to view genomic data as we continue to offer your data ready to use in galaxy this enables comparison between analytic steps you performed in galaxy without the need to export data and import it into a genome browser.

DATE Thursday August 11th 2011
TIME 15:00
LOCATION IMP Seminar Room 3

Usermeeting with Focus on RNA

Roger talks about his experiences with RNA-seq

DATE Thursday March 10th 2011
TIME 15:00
SPEAKER
LOCATION IMP Seminar Room

Usermeeting focusing on Chip-Seq

 

 

DATE Thursday March 17th 2011
TIME 15:00
SPEAKER ...
LOCATION IMP Seminar Room

 

Galaxy Introduction (beta)

 

TITLE: Galaxy Introduction 
DATE Thursday March 24th 2011
TIME 14:00
LOCATION IMP Seminar Room